chess-hic
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  • Getting started with chess-hic
  • The chess-hic command line tool
  • FAQ
chess-hic
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Welcome to chess-hic’s documentation!¶

  • Getting started with chess-hic
    • Overview
    • Installation
      • Prerequisites
      • Installation from the Python Package Index (PyPi)
      • Installation from source
    • Example analysis
      • Finding differences between samples of different conditions
  • The chess-hic command line tool
    • chess pairs
      • Positional Arguments
      • Named Arguments
    • chess sim
      • Positional Arguments
      • Named Arguments
    • chess extract
      • Positional Arguments
      • Named Arguments
    • chess crosscorrelate
      • Positional Arguments
  • FAQ
    • Why is chess sim so slow?
    • Why do I get “ERROR No valid region pairs found” when using Juicer .hic files?
    • Can I use CHESS to compare the results of loop calling software between samples?

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2020, Silvia Galan, Nick Machnik, Kai Kruse Revision e6381ade.

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